Application of Modeling in Ecological Network Analysis

Authors
1 Department of Environmental Sciences, Faculty of Natural Resources, University of Zabol, Zabol, Iran
2 Department of Environmental Sciences & Engineering, Faculty of Agriculture and Natural Resources, Ardakan University, P.O. Box 184, Ardakan, Iran
Abstract
Ecological network analysis (ENA) is a new systematic approach that studies the structure and dynamics of ecological systems such as food networks. It is also able to evaluate ecosystem function and make it possible to compare ecological systems. The application domain of this approach has been wide and nowadays expanded to ecological risk assessment. There are many ecological models and the method of network analysis has been significantly improvedin recent years. Among these models, Ecopath and Inverse modeling are great for investigation of relationships in food webs. Some of the challenges users face when applying these models include the need to characterizing an entire ecosystem flows, data on the amount of each component and data accuracy. Determining the allowable exploitation amounts of natural resources and prediction of human effects on natural systems are some of the important applications of ENA. This approach has long been considered in environmental studies to solve various environmental problems, however, studies of this kind in Iran are few. Therefore, this study was performed to introduce ENA and especially food models and its applications on harvesting systems, which warrants more attention of researchers and managers in the field of environmental sciences.
Keywords

Albert, R.; Jeong, H. & Barabasi, A. L. 2000. Error and attack tolerance of complex networks, Nature, 406: 378-382 .
Allain, V.; Nicol. S.; Essington, T.; Okey, T.; Olson, B. & Kirby, D. 2007. An Ecopath with Ecosim model of the Western and Central Pacific Ocean warm pool pelagic ecosystem. Scientific committee, third regular session. Honolulu, United States of America, p 42.
Andras, P.; Gwyther, R.; Madalinski, A.; Lynden, S.; Andras, A. & Young, M. 2007. Ecological network analysis: an application to the evaluation of effects of pesticide use in an agricultural environment, Pest Management Science, 63 (10): 943–953.
Baird, D.; Christian, R. R.; Peterson, C. H. & Johnson, G. A. 2004. Consequences of hypoxia on estuarine ecosystem function: energy diversion from consumers to microbes, Ecological Applications, 14 (3): 805–822.
Banerjee‎, A.; Chakrabarty‎, M.; Rakshit‎, N.; Mukherjee‎, J. & Ray‎, S. 2017. Indicators and ‎assessment of ecosystem health of Bakreswar reservoir, India: An approach through ‎network ‎analysis‎, Ecological Indicators, 80: 163-173.‎
Barausse, A.; Duci, A.; Mazzoldi, C.; Artioli, Y. & Palmeri, L. 2009. Trophic network model of the Northern Adriatic Sea: Analysis of an exploited and eutrophic ecosystem, Estuarine, Coastal and Shelf Science, 83 (4): 577–590.‎
Biswas, A. K. 1981. Models for Water Quality Management, McGraw-Hill.
Bodin, O. & Norberg, J. 2007. A netwok approach for analysis spatially structured populations in fragmented landscape, Landscape Ecology, 22 (1): 31-44.
Bondavalli, C. & Ulanowicz, R. E. 1999. Unexpected effects of predators upon their prey: the case of the American Alligator, Ecosystems, 2 (1): 49-63.
Borrett, S. R.; Sheble, L.; Moody, J. & Anway, E. C. 2017. Bibliometric review of ecological network analysis: 2010–2016, Ecological Modelling, 382: 63-82.
Burel, F. & Baudry, J. 1990. Structural dynamic of hedgerow network landscape in Brittany France, Landscape ecology, 4 (4): 197- 210.
Caswell, H. 1989. Matrix Population Models, Sinauer.
De Angelis, D. L. & Gross, L. J. 1992. Individual-Based Models and Approaches in Ecology, Chapman and Hall.
Dunne, J. A.; Williams, R. J. & Martinez, N. D. 2002. Food-web structure and network theory: the role of connectance and size, PNAS, 99:12917–12922.
Fath, B. & Scharler, U. 2018. Systems Ecology: Ecological Network Analysis. In: Reference Module in Earth Systems and Environmental Sciences, Elsevier, 1083-1088.
Fath, B. D. 2004. Network analysis applied to large-scalecyber-ecosystems, Ecological Modelling, 171 (4): 329–337.
Fath, B. D. & Borrett, S. R. 2006. A Matlab Function for Network Environ Analysis, Environmental Modelling and Software, 21: 375-405.
Fath, B. D.; Scharler, U. M.; Ulanowiczd, R. E. & Hannon, B. 2007. Ecological network analysis: network construction, Ecological Modeling, 208: 49–55.
Finn, J. T. 1980. Flow analysis of models of the hubbard brook ecosystem, Ecology, 61: 562–571.
Garlaschelli, D.; Caldarelli, G. & Pietronero, L. 2003. Universal scaling relations in food webs, Nature, 423: 165–168.
Han, B. P. 1997. On several measures concerning flow variables in ecosystems, Ecological Modelling, 104: 289–302.
Hannon, B. 1973. The structure of ecosystems. Journal of Theoretical Biology, 41 (3): 535-546.
Horn, S.; Vega‎ , C.; Asmus‎ , R.; Schwemmer.‎, P.; Enners‎ , L.; Garthe‎, S.; Haslob‎, H.; ‎Binder‎ , K. & Asmus‎ , H. 2019. Impact of birds on intertidal food webs assessed with ‎ecological network analysis‎. Estuarine, Coastal and Shelf Science‎, 219: ‎107-119‎.‎
Ings, T. C.; Montoya, J. M.; Bascompte, J.; Bluthgen, N.; Brown, L.; Dormann, C. F.; Edwards, F.; Figueroa, D.; Jacob, U.; Jones, J. I.; Lauridsen, R. B.; Ledger, M. E.; Lewis, H. M.; Olesen, J. M.; van Veen, F. J.; Warren, P. H. & Woodward, G. 2009. Ecological networks- beyond food webs, Journal of Animal Ecology, 78: 253–269.
Jabariyan Amiri, B. 1998. Introducing an objectivist method for determining the ecological vulnerability of ecosystems, Journal of Environmental Studies, 24(21): 58-68.
Jabariyan Amiri, B. 2017. Environmental modeling, University of Tehran Press.
Jassby, A. D. & Platt, T. C. 1976. Mathematical formulation of the relationship between photosynthesis and light for phytoplankton, Limnology and Oceanography, 21: 540–547.
Jeong, H.; Mason, S. P.; Barabasi, A. L. & Oltvai, Z. N. 2001. Lethality and centrality in protein networks, Nature, 411: 41–42.
Kazanci, C.; Matamba, L.; Tollner, E. W. 2009. Cycling in ecosystems: An individual based approach, Ecological Modelling, 220 (21): 2908-2914.
Kharrazi, A. & Akiyama, T. 2019. Application of the Ecological Network Analysis (ENA) Approach in Water Resource Management Research: Strengths, Weaknesses, and Future Research Directions. In: Singh R.; Kolok A. & Bartelt-Hunt S. (eds) Water Conservation, Recycling and Reuse: Issues and Challenges, Springer, Singapore.
Lau, M. K.; Borrett, S. R.; Hines, D. E. & Singh, P. 2015.Tools for Ecological Network Analysis, Package ‘enaR’. P48. URL https://github.com/SEELab/enaR.
Lee, K. M.; Lee, S. Y. & Connolly, R. M. 2011. Combining stable isotope enrichment, compartmental modelling and ecological network analysis for quantitative measurement of food web dynamics, Methods in Ecology and Evolution, 2: 56–65.
Min, Y.; Jin, X.; Chang, J.; Peng, C.; Gu, B.; Ge, Y. & Zhong, Y. 2011. Weak indirect effects inherent to nitrogen biogeochemical cycling within anthropogenic ecosystems: A network environ analysis, Ecological Modelling, 222: 3277– 3284.
Minor, E. S.; Tessel, S. M.; Engelhardt, K. A. M. & Lookingbill, T. R. 2009. The role of landscape connectivity in assembling exotic plant communities: a network analysis, Ecology, 90:1802–1809.
Park, K.; Jung, H. S.; Kim, H. S. & Ahn, S, M. 2005. Three-dimensional hydrodynamic-eutrophication model (HEM-3D): application to Kwang-Yang Bay, Korea, Marine Environmental Research, 60: 171–193.
Patten, B. C.; Bosserman, R. W.; Finn, J. T. & Cale, W. G. 1976. Propagation of cause in ecosystems. In: Patten, R. C. (ed) System analysis and simulation in ecology, IV, Academic Press.
Periorellis, P.; Idowu, O. C.; Lynden, S. J.; Young, M. P. & Andras, P. 2004. Dealing with complex networks of protein interactions: a security measure. Proc 9th IEEE Internat Conf on Engineering of Complex Systems (ICECCS), IEEE Computer Society, Los Alamitos, California, pp. 29- 36.
Preziosi, D. V. & Pastorok, R. A. 2008. Ecological food web analysis for chemical risk assessment, Science of the total environmental, 406 (3): 491 – 502.
Proulx, S. R.; Promislow, D. E. L. & Phillips, P. C. 2005. Network thinking in ecology and evolution, Trends in Ecology and Evolution, 20 (6): 345–353.
Rakshit‎, N.; Banerjee‎, A.; Mukherjee‎, J.; Chakrabarty‎, M.; Borrett,‎ S. & Ray,‎ S. 2017. ‎Comparative study of food webs from two different time periods of Hooghly Matla ‎estuarine system, India ‎through network analysis‎, Ecological Modelling‎, 356: ‎25-37‎.‎
Raoux, A.; Tecchio, S.; Pezy‎, J.; Lassalle‎, G.; Degraer‎, S.; Wilhelmsson‎, D.; Cachera, M.; ‎Ernande, B.; Le Guen, C.; Haraldsson, M.; Grangeré, K.; Le Loch, F.; Dauvin‎, J. & Niquil,‎ ‎N. 2017. Benthic and fish aggregation inside an offshore wind farm: Which effects on the ‎trophic web functioning?,‎ Ecological Indicators,‎ 72: 33-46.‎
Rossberg, A. G.; Matsuda, H.; Amemiya, T. & Itoh, K. 2005. An explanatorymodel for food-web structure and evolution, Ecological Complexity, 2 (3): 312–321.
Spieles, D. J. & Mitsch, W. J. 2003. A model of macroinvertebrate trophic structure and oxygen demand in freshwater wetlands. Ecolologycal Modelling, 161: 183–194.
Stow, C.; Roessler, C.; Borsuk, M.; Bowen, J. & Reckhow, K. 2003. Comparison of Estuarine Water Quality Models for Total Maximum Daily Load Development in Neuse River Estuary, Journal of Water Resources Planning and Management, 129 (4): 307–314.
Su, M.; Zhang M.; Lu, W.; Chang, X.; Chen, B.; Liu, G.; Hao, Y. & Zhang, Y. 2017. ‎ENA-based ‎evaluation of energy supply security: Comparison between the Chinese ‎crude oil and natural gas supply ‎systems, Renewable and Sustainable Energy Reviews, ‎‎72: 888-899.‎
Ulanowicz, R. E. 2004. Quantitative methods for ecological network analysis, Computational Biology and Chemistry, 28 (5-6): 321-339.
Ulanowicz, R. E. 2009. The Dual Nature of Ecosystem Dynamics, Ecological Modelling, 220: 1886–1892.
Ulanowicz, R. E. 2011. Quantitative methods for ecological network analysis and its application to coastal ecosystems, Treatise on Estuarine and Coastal Science, 9: 35-57.
Wang, H. V. & Johnson, B. J. 2000. Validation and application of the second generation three dimensional hydrodynamic model of Chesapeake Bay, Water Quality and Ecosystem Modeling, 1 (1-4): 51–90.
Wang, S.; Liu, Y. & Chen, Y. 2018. Multiregional input–output and ecological ‎network analyses for ‎regional energy–water nexus within China, Applied Energy, 227: ‎‎353-364.‎
Yi, Y.; Tang, C.; Yi, T.; Yang, Z. & Zhang, S. 2017. Health risk assessment of heavy ‎metals in fish and accumulation patterns in food web in the upper Yangtze ‎River, China, ‎Ecotoxicology and Environmental Safety, 145: 295-302.‎
Zhang, L. & Wang, H. 2006. Planning an ecological network of Xiamen Island (China) using landscape metrics and network analysis, Landscape and Urban Planning, 78 (4): 449–456.
Zhang, Y.; ‎ Li, Y.; Hubacek, K.; Tian, X. & Lu, Z. 2019. Analysis of CO2 transfer ‎processes involved in global trade based on ecological network analysis, Applied ‎Energy, 233-234: ‎576-583‎.‎